Category Archives: Uncategorized

1000 Genomes Samples sequenced deeply by Illumina, Inc

Here is the link to the new 150 deeply Illumina- sequenced 1000 Genomes samples…

https://www.ebi.ac.uk/ena/data/view/PRJEB20654
https://github.com/Illumina/Polaris/wiki/HiSeqX-Diversity-Panel

There is also a planned trio panel (51 trios) and a repeat expansion project.

https://github.com/Illumina/Polaris/

IvyPlus Exchange Program + Imperial, UCL and U of London

a link to details on IvyPlus exchange program:
https://gsas.yale.edu/academics/exchanges/exchange-scholar-program-ivyplus-exchange

turns out Imperial College London is the institution that left U of London. UCL is still part of U of London
indeed: https://www.theguardian.com/education/2005/dec/09/highereducation.administration

Two CBB events: Jeffrey Leek, Computational Biology and Bioinformatics speaker on 5-2-18

I don’t know how many of you have come across this blog, simply statistics https://simplystatistics.org, but he is one of the main contributors, and to say, he’s expert on batch effect and meta-analysis.

https://simplystatistics.org/2018/02/08/what-do-fahrenheit-comma-separated-files-and-markdown-have-in-common/

CBB_seminar_series_May_ template.pdf

Statseminars Stat & Data Science Seminar, Speaker Carl Zimmer 4/27 @ 11am-1pm

Title: The Library of Babel: On Trying to Read My Genome

Information and Abstract:

Applied Data Science Seminar. Not long ago, information about our DNA was virtually impossible to gain. Now, thanks to the falling cost of DNA sequencing and the growing power of bioinformatics, genetic information is undergoing a Gutenberg-scale explosion of popularity. Millions of people are paying for DNA tests from companies like 23andMe and Ancestry.com, and they are getting unprecedented amounts of information about their ancestry and hereditary diseases. For my latest book, “She Has Her Mother’s Laugh,” I got my genome sequenced and enlisted scientists at Yale and elsewhere to help me interpret it. In my talk, I’ll discuss the results of that exploration–at once enlightening and baffling

For more details and upcoming events visit our website at
http://statistics.yale.edu/ .

YINS Tomorrow – 4/18 Sanjeev Arora, Toward theoretical understanding of deep learning

“Toward theoretical understanding of deep learning”

Speaker: Professor Sanjeev Arora

Princeton University & Institute for Advanced Study

Tomorrow – Wednesday, April 18, 2018, 12:00-1:00pm

Location: Yale Institute for Network Science, 17 Hillhouse Avenue, 3rd floor

Abstract: This talk will be a survey of ongoing efforts and recent results to develop better theoretical understanding of deep learning, from expressiveness to optimization to generalization theory. We will see the (limited) success that has been achieved and the open questions it leads to. (My expository articles appear at
www.offconvex.org (link is external))

Bio: Sanjeev Arora is Charles C. Fitzmorris Professor of Computer Science at Princeton University and Visiting Professor at the Institute for Advanced Study. He is an expert in theoretical computer science, especially theoretical ML. He has received the Packard Fellowship (1997), Simons Investigator Award (2012), Goedel Prize (2001 and 2010), ACM-Infosys Foundation Award in the Computing Sciences (now called the ACM prize) (2012), and the Fulkerson Prize in Discrete Math (2012).

Upcoming:

4/25/18: Adam Auton (23andme)

5/2/18: Andre Levchenko

Bass 434 Zoom meetings with iPad annotation

Hi all,

Here are the instructions for setting up the iPad in Bass 434 to interface with the main screen, and to allow annotation during a Zoom meeting:

1) On both the iPad and the Mac mini, go to yale.zoom.us (the iPad has the Zoom app installed as well)

2) Click on "Join a Meeting"

3) In the box for "Join with Personal Link Name" enter (for both devices): lori.bass.434

4) Share the Mac mini screen with the meeting participants

5) On the iPad, click on the "Annotate" tool.

6) Scribble and annotate to thine heart’s content.

Note that the login times out after 24 hours, a relevant fact for those 25 hour meetings in our future.

Best wishes,

Prashant.

farnam disk usage

total 5.67534E+11 of 600TB
gg487 72172301056
sl857 46536808960
jx98 42877998336
tg397 41892482688
fn64 37383067136
cy288 35153647488
mg888 32460720000
jz435 28937379968
dl598 22267850752
sk972 21964532864
pse5 20727790208
sl2373 15560952448
cs784 14082331264
mr724 11791888768
sl847 9973112704
wum2 9466381952
ll426 8905029760
pmm49 8371290624
jad248 7989755008
yy222 6347266176
rrk24 6182451584
yf9 5816445952
hm444 5719887232
mihali 5459016704
meg98 4376345984
yy532 4123354880
lc848 4090249984
ah633 3367398912
bp272 2906803456
xk4 2478567296
jjl86 2104665728
rdb9 1763952640
msp48 1748680320
as2665 1596345472
ky26 1583088768
jw2394 1562731648
ml724 1557992448
jl56 1480538368
ha275 1467031936
sb238 1275168128
gf3 1189340928
jrb97 1012897664
zc264 1006521728
xs252 920548352
slw67 837290496
pdm32 789250432
lh372 671649152
mx55 662563200
dc547 648720384
jsr59 592016256
xc279 554618880
as898 506352512
gunel 499962624
mpw6 385383040
hz244 374372096
km735 337744640
nb23 324053504
ls926 314810880
keckadmins 265108480
aa544 249558400
xl348 237337088
yf95 198000512
simen 163574272
xz374 162198144
lr579 159751424
nmb38 115795456
jjl83 109213440
mas343 96425216
yk336 95688832
williams 95688832
zl222 68034176
wb244 63682432
rka24 59127808
jhq4 48107776
yy448 46536704
law72 45638912
aa65 44632832
shuch 39508992
gene760 33406080
spb63 26176512
zhao 25241600
ajf73 22082688
amg89 21919360
co254 21889920
an377 19965312
xm24 19335680
jc2296 17970560
jw72 17455616
njc2 16694016
root 9156608
jk935 6167936
cc59 4636672
yz464 1122176
gene760_2016 475520
bab99 387584
dw396 383872
tl444 326144
dr395 185472
mj332 60160
rm658 4096
jjp76 3968